Nextflow Registry | nf-core/picard/scatterintervalsbyns@0.0.0-0c7146d

nf-core/picard/scatterintervalsbyns @ 0.0.0-0c7146d

Writes an interval list created by splitting a reference at Ns.A Program for breaking up a reference into intervals of alternating regions of N and ACGT bases

interval_list scatter regions

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

Summary

Writes an interval list created by splitting a reference at Ns.A Program for breaking up a reference into intervals of alternating regions of N and ACGT bases

Get started

Add the following snippet to your workflow script to include this module.

include { PICARD_SCATTERINTERVALSBYNS } from 'nf-core/picard/scatterintervalsbyns'

License

MIT License

Process

`Name`	`PICARD_SCATTERINTERVALSBYNS`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing fasta information e.g. [ id:'test', single_end:false ]
`fasta` file	Fasta file to derive the intervals from `*.{fasta,fa,fna}`

#2 tuple

`meta2` map	Groovy Map containing fai information e.g. [ id:'test', single_end:false ]
`fai` file	Index of the fasta file `*.fai`

#3 tuple

`meta3` map	Groovy Map containing dictionary information e.g. [ id:'test', single_end:false ]
`dict` file	Sequence dictionary of the fasta file `*.dict`

Output 2 channels

#1 intervals tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.interval_list` file	The scattered intervals `*.interval_list`

#2 versions_picard tuple

`${task.process}` string	The process the versions were collected from
`picard` string	The tool name
`picard ScatterIntervalsByNs --version 2>&1 \| sed -n 's/.*Version://p'` string	The command used to generate the version of the tool

Tool	Description	Homepage
picard	A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.	https://broadinstitute.github.io/picard/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:03:01 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpicard%2Fscatterintervalsbyns/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/picard/scatterintervalsbyns/blobs/sha256:6407eb8814b8292514ae60ff2a9e1c33e5f6975f6620c47e4987c7f0ac452b4b
Size	2.7 KB
Checksum	sha256:6407eb8814b8292514ae60ff2a9e1c33e5f6975f6620c47e4987c7f0ac452b4b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:03:01 (UTC)		1	2.7 KB	-