Nextflow Registry | nf-core/picard/extractfingerprint@0.0.0-0c7146d

nf-core/picard/extractfingerprint @ 0.0.0-0c7146d

Computes/Extracts the fingerprint genotype likelihoods from the supplied file. It is given as a list of PLs at the fingerprinting sites.

picard extract fingerprint bam

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @adamrtalbot @mauro-saporita

Maintainers: @adamrtalbot @mauro-saporita

Computes/Extracts the fingerprint genotype likelihoods from the supplied file. It is given as a list of PLs at the fingerprinting sites.

Add the following snippet to your workflow script to include this module.

include { PICARD_EXTRACTFINGERPRINT } from 'nf-core/picard/extractfingerprint'

MIT License

Process

`Name`	`PICARD_EXTRACTFINGERPRINT`

Input 5 channels

#1 tuple

`haplotype_map` file	A file of haplotype information. The file lists a set of SNPs, optionally arranged in high-LD blocks, to be used for fingerprinting. See https://software.broadinstitute.org/gatk/documentation/article?id=9526 for details. `*.{txt,vcf,vcf.gz}`

`fasta` file	Reference sequence file `*.{fasta,fna,fa}`

`fasta_fai` file	Reference sequence index file `*.{fai}`

`sequence_dictionary` file	Reference sequence dictionary file

Output 3 channels

#1 tbi tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.vcf.gz.tbi` file	Tabix index file `*.vcf.gz.tbi`

#2 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.vcf.gz` file	VCF file `*.vcf.gz`

#3 versions_picard tuple

`${task.process}` string	The process the versions were collected from
`picard` string	The tool name
`picard ExtractFingerprint --version 2>&1 \| sed -n 's/.*Version://p'` string	The command used to generate the version of the tool

Tool	Description	Homepage
picard	A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.	https://broadinstitute.github.io/picard/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:02:43 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpicard%2Fextractfingerprint/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/picard/extractfingerprint/blobs/sha256:5c70f01da5832bf6cbc6584b29c45e088f344845e19ea84b1537ab663b7a551c
Size	3.2 KB
Checksum	sha256:5c70f01da5832bf6cbc6584b29c45e088f344845e19ea84b1537ab663b7a551c
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:02:43 (UTC)		1	3.2 KB	-