nf-core/picard/collectinsertsizemetrics @ 0.0.0-0c7146d
Summary
Collect metrics about the insert size distribution of a paired-end library.
Get started
Add the following snippet to your workflow script to include this module.
include { PICARD_COLLECTINSERTSIZEMETRICS } from 'nf-core/picard/collectinsertsizemetrics'
License
MIT License
Process
Name
|
PICARD_COLLECTINSERTSIZEMETRICS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
Output
3 channels
#1
metrics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Values used by Picard to generate the insert size histograms *.txt
|
#2
histogram
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pdf
file
|
Insert size histogram in PDF format *.pdf
|
#3
versions_picard
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
picard
string
|
The tool name |
picard CollectInsertSizeMetrics --version 2>&1 | sed -n 's/.*Version://p'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| picard | Java tools for working with NGS data in the BAM format | https://broadinstitute.github.io/picard/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:02:30 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpicard%2Fcollectinsertsizemetrics/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/picard/collectinsertsizemetrics/blobs/sha256:824abca831d351d52255a0a8659b35012aa2cbc28400d4d13a1dea5d2e64567b |
| Size | 2.9 KB |
| Checksum | sha256:824abca831d351d52255a0a8659b35012aa2cbc28400d4d13a1dea5d2e64567b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:02:30 (UTC) | 1 | 2.9 KB | - |