Nextflow Registry | nf-core/pbtk/pbindex@0.0.0-0c7146d

nf-core/pbtk/pbindex @ 0.0.0-0c7146d

Minimalistic tool which creates an index file that enables random access into PacBio BAM files

genomics bam index pacbio

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

Minimalistic tool which creates an index file that enables random access into PacBio BAM files

Add the following snippet to your workflow script to include this module.

include { PBTK_PBINDEX } from 'nf-core/pbtk/pbindex'

MIT License

Process

`Name`	`PBTK_PBINDEX`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`bam` file	Input BAM file `*.bam`

Output 2 channels

#1 pbi tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.pbi` file	Index file `*.bam.pbi`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
pbtk	pbtk - PacBio BAM toolkit	https://github.com/PacificBiosciences/pbtk

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:01:50 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpbtk%2Fpbindex/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pbtk/pbindex/blobs/sha256:8d34f3ddf27d1e3db6dbada43f1a6493c315613d63f10f731ba90311c4e221de
Size	2.1 KB
Checksum	sha256:8d34f3ddf27d1e3db6dbada43f1a6493c315613d63f10f731ba90311c4e221de
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:01:50 (UTC)		1	2.1 KB	-