Nextflow Registry | nf-core/pbsv/call@0.0.0-0c7146d

nf-core/pbsv/call @ 0.0.0-0c7146d

pbsv/call - PacBio structural variant (SV) calling and analysis tools

variant pacbio genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @tanyasarkjain

Maintainers: @tanyasarkjain

pbsv/call - PacBio structural variant (SV) calling and analysis tools

Add the following snippet to your workflow script to include this module.

include { PBSV_CALL } from 'nf-core/pbsv/call'

MIT License

Process

`Name`	`PBSV_CALL`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`svsig` file	structural variant file

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'reference']`
`fasta` file	fasta file used as reference

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.vcf` file	structural variant file

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
pbsv	pbsv - PacBio structural variant (SV) calling and analysis tools	https://github.com/PacificBiosciences/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:01:45 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpbsv%2Fcall/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pbsv/call/blobs/sha256:b96fd7d29c7026c20f0797090c8d11b17da8a424dbd502789e88a997077099c3
Size	2.4 KB
Checksum	sha256:b96fd7d29c7026c20f0797090c8d11b17da8a424dbd502789e88a997077099c3
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:01:45 (UTC)		1	2.4 KB	-