nf-core/pbjasmine @ 0.0.0-0c7146d
Summary
Identify specific base modifications in PacBio HiFi reads by analyzing polymerase kinetic signatures
Get started
Add the following snippet to your workflow script to include this module.
include { PBJASMINE } from 'nf-core/pbjasmine'
License
MIT License
Process
Name
|
PBJASMINE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
BAM/CRAM file *.{bam,cram}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.bam
file
|
Consensus reads with jasmine modification calls *.bam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pbjasmine | Call select base modifications in PacBio HiFi reads. | https://github.com/pacificbiosciences/jasmine |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:01:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpbjasmine/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pbjasmine/blobs/sha256:80fdcd1df8c829c18f224824e4608f0779ed1e124652eac8df7bfb8124da0b9b |
| Size | 2.3 KB |
| Checksum | sha256:80fdcd1df8c829c18f224824e4608f0779ed1e124652eac8df7bfb8124da0b9b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:01:37 (UTC) | 1 | 2.3 KB | - |