Nextflow Registry | nf-core/pbbam/pbmerge@0.0.0-0c7146d

nf-core/pbbam/pbmerge @ 0.0.0-0c7146d

The pbbam software package provides components to create, query, & edit PacBio BAM files and associated indices. These components include a core C++ library, bindings for additional languages, and command-line utilities.

pbbam pbmerge bam

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sguizard

Maintainers: @sguizard

Summary

Get started

Add the following snippet to your workflow script to include this module.

include { PBBAM_PBMERGE } from 'nf-core/pbbam/pbmerge'

License

MIT License

Process

`Name`	`PBBAM_PBMERGE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bam` file	BAM files to merge `*.bam`

Output 3 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bam` file	The merged bam file `*.bam`

#2 pbi tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.pbi` file	BAM Pacbio index file `*.bam.pbi`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
pbbam	PacBio BAM C++ library	https://github.com/PacificBiosciences/pbbioconda

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:01:32 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpbbam%2Fpbmerge/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pbbam/pbmerge/blobs/sha256:03d8a9754ef16001b5bddce67631e71be9d7f2f0a868281ac8ce981268caaa85
Size	2.5 KB
Checksum	sha256:03d8a9754ef16001b5bddce67631e71be9d7f2f0a868281ac8ce981268caaa85
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:01:32 (UTC)		1	2.5 KB	-