nf-core/parabricks/genotypegvcf @ 0.0.0-0c7146d
Summary
NVIDIA Clara Parabricks GPU-accelerated joint genotyping, replicating GATK GenotypeGVCFs
Get started
Add the following snippet to your workflow script to include this module.
include { PARABRICKS_GENOTYPEGVCF } from 'nf-core/parabricks/genotypegvcf'
License
MIT License
Process
Name
|
PARABRICKS_GENOTYPEGVCF |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input
file
|
gvcf file for samples to be jointly genotyped. *.{g.vcf,g.vcf.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information. [ id:'test'] |
|---|---|
fasta
file
|
reference fasta - must be unzipped. *.fasta
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.vcf
file
|
vcf file after gvcf conversion. *.vcf
|
#2
versions_parabricks
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
parabricks
string
|
The tool name |
pbrun version | grep -m1 '^pbrun:' | sed 's/^pbrun:[[:space:]]*//'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| parabricks | NVIDIA Clara Parabricks GPU-accelerated genomics tools | https://www.nvidia.com/en-us/clara/genomics/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 19:01:07 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fparabricks%2Fgenotypegvcf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/parabricks/genotypegvcf/blobs/sha256:bc79bd470059d6d34c4144714bbf01af2cd3e48f4d1004bab907b01487f7af45 |
| Size | 2.4 KB |
| Checksum | sha256:bc79bd470059d6d34c4144714bbf01af2cd3e48f4d1004bab907b01487f7af45 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:01:07 (UTC) | 1 | 2.4 KB | - |