nf-core/pairix @ 0.0.0-0c7146d
Summary
a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates
Get started
Add the following snippet to your workflow script to include this module.
include { PAIRIX } from 'nf-core/pairix'
License
MIT License
Process
Name
|
PAIRIX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pair
file
|
pair file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pair
file
|
pair index file *.px2
|
*.px2
file
|
pair index file *.px2
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pairix | 2D indexing on bgzipped text files of paired genomic coordinates | https://github.com/4dn-dcic/pairix |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:00:19 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpairix/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pairix/blobs/sha256:cad3aa5ab9cf38cd7c033a49998f8e4d8e38d062dac41857d91b45346e7be1c6 |
| Size | 2.0 KB |
| Checksum | sha256:cad3aa5ab9cf38cd7c033a49998f8e4d8e38d062dac41857d91b45346e7be1c6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:00:19 (UTC) | 1 | 2.0 KB | - |