nf-core/paftools/sam2paf @ 0.0.0-0c7146d
Summary
A program to convert bam into paf.
Get started
Add the following snippet to your workflow script to include this module.
include { PAFTOOLS_SAM2PAF } from 'nf-core/paftools/sam2paf'
License
MIT License
Process
Name
|
PAFTOOLS_SAM2PAF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
An input bam file to be converted into paf. |
Output
3 channels
#1
paf
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|
#2
versions_paftools
tuple
${task.process}
string
|
Name of the process |
|---|---|
paftools
string
|
Name of the tool |
paftools.js version
eval
|
The expression to obtain the version of the tool |
#3
versions_samtools
tuple
${task.process}
string
|
Name of the process |
|---|---|
samtools
string
|
Name of the tool |
samtools version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| paftools | A program to manipulate paf files / convert to and from paf. | https://github.com/lh3/minimap2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:00:17 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpaftools%2Fsam2paf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/paftools/sam2paf/blobs/sha256:6d34f0398d88ab00b98d0cd2cb3304c9a40b56856cfdd37c7322f137a5170b05 |
| Size | 2.2 KB |
| Checksum | sha256:6d34f0398d88ab00b98d0cd2cb3304c9a40b56856cfdd37c7322f137a5170b05 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:00:17 (UTC) | 1 | 2.2 KB | - |