nf-core/orfipy @ 0.0.0-0c7146d
Summary
orfipy is a tool written in python/cython to extract ORFs in an extremely and fast and flexible manner.
Get started
Add the following snippet to your workflow script to include this module.
include { ORFIPY } from 'nf-core/orfipy'
License
MIT License
Process
Name
|
ORFIPY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', fasta ] |
|---|---|
infile
file
|
Input file, in plain Fasta/Fastq or gzipped format, containing Nucletide sequences *.{fasta,fa,fastq,fastq.gz,fq,fa.gz,fq.gz}
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', fasta ] |
|---|---|
${prefix}/${prefix}.bed
file
|
Output BED file containing the coordinates of predicted ORFs |
#2
versions_orfipy
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
orfipy
string
|
The tool name |
orfipy --version | sed 's/.*version //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| orfipy | orfipy: fast and flexible search for open reading frames in fasta sequences | https://github.com/urmi-21/orfipy |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:00:11 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Forfipy/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/orfipy/blobs/sha256:1b3ec9fc5a3648905283b3e9c62201abbcfc0c909dc76257c82ccd0e2e18dd7b |
| Size | 2.2 KB |
| Checksum | sha256:1b3ec9fc5a3648905283b3e9c62201abbcfc0c909dc76257c82ccd0e2e18dd7b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:00:11 (UTC) | 1 | 2.2 KB | - |