Nextflow Registry | nf-core/opt/track@0.0.0-0c7146d

nf-core/opt/track @ 0.0.0-0c7146d

track aligns query probe sequences to any target transcriptome

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @khersameesh24

Maintainers: @khersameesh24

track aligns query probe sequences to any target transcriptome

Add the following snippet to your workflow script to include this module.

include { OPT_TRACK } from 'nf-core/opt/track'

MIT License

Process

`Name`	`OPT_TRACK`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing information of the forward oriented fasta generated with the probes panel sequences generated with `opt flip` e.g. `[ id:'breast_cancer_probe_panel_sequences' ]`
`fwd_oriented_fa` file	Forward oriented fasta file generated by the opt flip command `*.fa`

#2 tuple

`meta2` map	Groovy Map containing the information of the genomic features and fasta files used as references e.g. `[ id:'gencode_references' ]`
`ref_annot_gff` file	Reference annotation in gff format `*.gff`
`ref_annot_fa` file	Reference annotation in fasta format `*.fa`

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 probes2target tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${meta.id}/probe2targets.tsv` file	TSV file containing the gene and transcript information to which each probe aligns `*.tsv`

Tool	Description	Homepage
opt	opt is a simple program that aligns probe sequences to transcript sequences to detect potential off-target probe activity	https://github.com/JEFworks-Lab/off-target-probe-tracker

Version	0.0.0-0c7146d
Commit ID	4e8e48c04e24c2159a5589a36bae0f038809cd48
Release Date	08 Apr 2026 19:00:08 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fopt%2Ftrack/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/opt/track/blobs/sha256:9fea2404ce19a7f1412ef84d8f01133c46eac1571ebcaf85086ba8f50400e89f
Size	2.3 KB
Checksum	sha256:9fea2404ce19a7f1412ef84d8f01133c46eac1571ebcaf85086ba8f50400e89f
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:00:08 (UTC)		1	2.3 KB	-