Nextflow Registry | nf-core/openms/peptideindexer@0.0.0-0c7146d

nf-core/openms/peptideindexer @ 0.0.0-0c7146d

Refreshes the protein references for all peptide hits.

refresh idXML openms proteomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jonasscheid

Maintainers: @jonasscheid

Refreshes the protein references for all peptide hits.

Add the following snippet to your workflow script to include this module.

include { OPENMS_PEPTIDEINDEXER } from 'nf-core/openms/peptideindexer'

MIT License

Process

`Name`	`OPENMS_PEPTIDEINDEXER`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`idxml` file	idXML identification file `*.idXML`
`fasta` file	Input sequence database in FASTA format `*.fasta`

Output 2 channels

#1 indexed_idxml tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.idXML` file	Refreshed idXML identification file `*.idXML`

#2 versions_openms tuple

`${task.process}` string	The name of the process
`openms` string	The name of the tool
`FileInfo --help 2>&1 \| sed -nE 's/^Version: ([0-9.]+).*/\1/p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
openms	OpenMS is an open-source software C++ library for LC-MS data management and analyses	https://openms.de

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:59:56 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fopenms%2Fpeptideindexer/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/openms/peptideindexer/blobs/sha256:82feda9b7fe492eb623d53acca56dc0d7599149044bf82640a06f4f629179a43
Size	2.5 KB
Checksum	sha256:82feda9b7fe492eb623d53acca56dc0d7599149044bf82640a06f4f629179a43
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:59:56 (UTC)		1	2.5 KB	-