Nextflow Registry | nf-core/odgi/squeeze@0.0.0-0c7146d

nf-core/odgi/squeeze @ 0.0.0-0c7146d

Squeezes multiple graphs in ODGI format into the same file in ODGI format.

squeeze odgi gfa combine graphs

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @subwaystation

Maintainers: @subwaystation

Squeezes multiple graphs in ODGI format into the same file in ODGI format.

Add the following snippet to your workflow script to include this module.

include { ODGI_SQUEEZE } from 'nf-core/odgi/squeeze'

MIT License

Process

`Name`	`ODGI_SQUEEZE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`graphs` file	Pangenome graph files in ODGI format. `*.{og}`

Output 2 channels

#1 graph tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.og` file	Squeezed pangenome graph in ODGI format. `*.{og}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
odgi	An optimized dynamic genome/graph implementation	https://github.com/pangenome/odgi

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:59:29 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fodgi%2Fsqueeze/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/odgi/squeeze/blobs/sha256:a7223c322f9597b960ec41ecfa292e01dc4677bc6b5b2ca07b458ecefd4c6748
Size	2.0 KB
Checksum	sha256:a7223c322f9597b960ec41ecfa292e01dc4677bc6b5b2ca07b458ecefd4c6748
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:59:29 (UTC)		1	2.0 KB	-