nf-core/nextclade/datasetget @ 0.0.0-0c7146d
Summary
Get dataset for SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks (C++ implementation)
Get started
Add the following snippet to your workflow script to include this module.
include { NEXTCLADE_DATASETGET } from 'nf-core/nextclade/datasetget'
License
MIT License
Process
Name
|
NEXTCLADE_DATASETGET |
|---|
Input
2 channels
dataset
string
|
Name of dataset to retrieve. A list of available datasets can be obtained using the nextclade dataset list command. .+
|
|---|
tag
string
|
Version tag of the dataset to download. A list of available datasets can be obtained using the nextclade dataset list command. .+
|
|---|
Output
2 channels
#1
dataset
$prefix
directory
|
Directory containing the dataset |
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| nextclade | SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks | https://github.com/nextstrain/nextclade |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:58:42 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fnextclade%2Fdatasetget/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/nextclade/datasetget/blobs/sha256:80c151ffb44c5b894bfdf3e02ed838488dcbd127597b1300e5a67410bce5ee27 |
| Size | 2.6 KB |
| Checksum | sha256:80c151ffb44c5b894bfdf3e02ed838488dcbd127597b1300e5a67410bce5ee27 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:58:42 (UTC) | 1 | 2.6 KB | - |