Nextflow Registry | nf-core/ncbitools/vecscreen@0.0.0-0c7146d

nf-core/ncbitools/vecscreen @ 0.0.0-0c7146d

NCBI tool for detecting vector contamination in nucleic acid sequences. This tool is older than NCBI's FCS-adaptor, which is for the same purpose

assembly genomics quality control contamination vector NCBI

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @eeaunin

NCBI tool for detecting vector contamination in nucleic acid sequences. This tool is older than NCBI's FCS-adaptor, which is for the same purpose

Add the following snippet to your workflow script to include this module.

include { NCBITOOLS_VECSCREEN } from 'nf-core/ncbitools/vecscreen'

MIT License

Process

`Name`	`NCBITOOLS_VECSCREEN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', taxid:'6973' ]
`fasta_file` file	FASTA file that will be screened for contaminants

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`adapters_database_directory` directory	Directory containing the adapters database

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 vecscreen_output tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', taxid:'9606' ]
`${prefix}.vecscreen.out` file	VecScreen report file. This can be in different formats depending on the value of the optional -f parameter. 0 = HTML format, with alignments. 1 = HTML format, no alignments. 2 = Text list, with alignments. 3 = Text list, no alignments. default = 0 `*.vecscreen.out`

Tool	Description	Homepage
ncbitools	"NCBI libraries for biology applications (text-based utilities)"	https://www.ncbi.nlm.nih.gov/tools/vecscreen/

Version	0.0.0-0c7146d
Commit ID	0c7146d85582628b5d1034504702fa808632b1af
Release Date	08 Apr 2026 18:58:40 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fncbitools%2Fvecscreen/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ncbitools/vecscreen/blobs/sha256:a250b7c6790886cb91f38a4f7ae0cac654be0c4f944d6d9f002d83bd22b38129
Size	2.7 KB
Checksum	sha256:a250b7c6790886cb91f38a4f7ae0cac654be0c4f944d6d9f002d83bd22b38129
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:58:40 (UTC)		1	2.7 KB	-