Nextflow Registry | nf-core/nanofilt@0.0.0-0c7146d

nf-core/nanofilt @ 0.0.0-0c7146d

Filtering and trimming of Oxford Nanopore Sequencing data

nanopore filtering QC

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @lfreitasl

Maintainers: @lfreitasl

Filtering and trimming of Oxford Nanopore Sequencing data

Add the following snippet to your workflow script to include this module.

include { NANOFILT } from 'nf-core/nanofilt'

MIT License

Process

`Name`	`NANOFILT`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`reads` file	Gunziped fastq files from Oxford Nanopore sequencing. `*.fastq.gz`

`summary_file` file	Optional - Albacore or guppy summary file for quality scores

Output 3 channels

#1 log_file

`*.log` file	Log file generated by --logfile option in NanoFilt, the file must end with .log extension. `*.log`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 filtreads tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.fastq.gz` file	Gunziped fastq files after filtering. `*.fastq.gz`

Tool	Description	Homepage
nanofilt	Filtering and trimming of Oxford Nanopore Sequencing data	https://github.com/wdecoster/nanofilt

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:58:25 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fnanofilt/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/nanofilt/blobs/sha256:5c7fc157f0d6591e069171efc42ec897677fb54fa2d953c58d049671109bcac6
Size	2.2 KB
Checksum	sha256:5c7fc157f0d6591e069171efc42ec897677fb54fa2d953c58d049671109bcac6
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:58:25 (UTC)		1	2.2 KB	-