nf-core/mygene @ 0.0.0-0c7146d
Summary
Fetch the GO concepts for a list of genes
Get started
Add the following snippet to your workflow script to include this module.
include { MYGENE } from 'nf-core/mygene'
License
MIT License
Process
Name
|
MYGENE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gene_list
file
|
A tsv/csv file that contains a list of gene ids in one of the columns. By default, the column name should be "gene_id", but this can be changed by using "--columname gene_id" in ext.args. *.{csv,tsv}
|
Output
3 channels
#1
gmt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gmt
file
|
Each row contains the GO id, a description, and a list of gene ids. *.gmt
|
#2
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
(optional) A tsv file with the following columns: query, mygene_id, go_id, go_term, go_evidence, go_category, symbol, name, taxid *.tsv
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mygene | A python wrapper to query/retrieve gene annotation data from Mygene.info. | https://mygene.info/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:58:12 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmygene/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mygene/blobs/sha256:9e142e5a6d91f769e6c79aaab1940784a2d71dedce4aabbabffcb3b7aa425107 |
| Size | 6.0 KB |
| Checksum | sha256:9e142e5a6d91f769e6c79aaab1940784a2d71dedce4aabbabffcb3b7aa425107 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:58:12 (UTC) | 1 | 6.0 KB | - |