Nextflow Registry | nf-core/multiqc@0.0.0-0c7146d

nf-core/multiqc @ 0.0.0-0c7146d

Aggregate results from bioinformatics analyses across many samples into a single report

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @abhi18av @bunop @drpatelh @jfy133

Maintainers: @abhi18av @bunop @drpatelh @jfy133

Aggregate results from bioinformatics analyses across many samples into a single report

Add the following snippet to your workflow script to include this module.

include { MULTIQC } from 'nf-core/multiqc'

MIT License

Process

`Name`	`MULTIQC`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`multiqc_files` file	List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
`multiqc_config` file	Optional config yml for MultiQC `*.{yml,yaml}`
`multiqc_logo` file	Optional logo file for MultiQC `*.{png}`
`replace_names` file	Optional two-column sample renaming file. First column a set of patterns, second column a set of corresponding replacements. Passed via MultiQC's `--replace-names` option. `*.{tsv}`
`sample_names` file	Optional TSV file with headers, passed to the MultiQC --sample_names argument. `*.{tsv}`

Output 4 channels

#1 data tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`*_data` directory	MultiQC data dir `multiqc_data`

#2 plots tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`*_plots` file	Plots created by MultiQC `*_plots`

#3 report tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
`*.html` file	MultiQC report file `.html`

#4 versions tuple

`${task.process}` string	The process the versions were collected from
`multiqc` string	The tool name
`multiqc --version \| sed "s/.* //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
multiqc	MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.	https://multiqc.info/

Version	0.0.0-0c7146d
Commit ID	8098ab9d800821e8b18e17fd515ed1e4ebc523f4
Release Date	08 Apr 2026 18:57:55 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmultiqc/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/multiqc/blobs/sha256:15815d154989ae454f0cd79d8e8865bde9681f6aa13cedf2c0a35becddc6ec6a
Size	33.5 KB
Checksum	sha256:15815d154989ae454f0cd79d8e8865bde9681f6aa13cedf2c0a35becddc6ec6a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:57:55 (UTC)		1	33.5 KB	-