nf-core/mtnucratio @ 0.0.0-0c7146d
Summary
A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file.
Get started
Add the following snippet to your workflow script to include this module.
include { MTNUCRATIO } from 'nf-core/mtnucratio'
License
MIT License
Name
|
MTNUCRATIO |
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meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
(coordinate) sorted BAM/SAM file *.{bam,sam}
|
mt_id
string
|
Identifier of the contig/chromosome of interest (e.g. chromosome, contig) as in the aligned against reference FASTA file, e.g. mt or chrMT for mitochondria |
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json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.json
file
|
JSON file, containing metadata map with sample name, tool name and version, and metrics as in txt file *.json
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
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mtnucratio
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mtnucratio
file
|
Text file containing metrics (mtreads, mt_cov_avg, nucreads, nuc_cov_avg, mt_nuc_ratio) *.mtnucratio
|
| Tool | Description | Homepage |
|---|---|---|
| mtnucratio | A small tool to determine MT to Nuclear ratios for NGS data. | https://github.com/apeltzer/MTNucRatioCalculator |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:57:49 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmtnucratio/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mtnucratio/blobs/sha256:90f8f9ebb51f6cc875f3a165b4dddcc664ad37545f3b318f7f8d2d4b551e8860 |
| Size | 2.6 KB |
| Checksum | sha256:90f8f9ebb51f6cc875f3a165b4dddcc664ad37545f3b318f7f8d2d4b551e8860 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:57:49 (UTC) | 1 | 2.6 KB | - |