Nextflow Registry | nf-core/mtmalign/align@0.0.0-0c7146d

nf-core/mtmalign/align @ 0.0.0-0c7146d

Aligns protein structures using mTM-align

alignment MSA genomics structure

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @lrauschning

Maintainers: @lrauschning

Aligns protein structures using mTM-align

Add the following snippet to your workflow script to include this module.

include { MTMALIGN_ALIGN } from 'nf-core/mtmalign/align'

MIT License

Process

`Name`	`MTMALIGN_ALIGN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test']`
`pdbs` file	Input protein structures in PDB format. Files may be gzipped or uncompressed. They should contain exactly one chain! `*.{pdb}`

`compress` boolean	Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded.

Output 4 channels

#1 alignment tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test']`
`${prefix}.aln${compress ? '.gz' : ''}` file	Alignment in FASTA format. May be gzipped or uncompressed. `*.aln{.gz,}`

#2 structure tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test']`
`${prefix}.pdb${compress ? '.gz' : ''}` file	Overlaid structures in PDB format. May be gzipped or uncompressed. `${prefix}.pdb{.gz,}`

#3 versions_pigz tuple

`${task.process}` string	The name of the process
`pigz` string	The name of the tool
`pigz --version 2>&1 \| sed "s/^.pigz[[:space:]]//"` eval	The expression to obtain the version of the tool

#4 versions_mtmalign tuple

`${task.process}` string	The name of the process
`mtm-align` string	The name of the tool
`mtm-align -h \| sed -n "s/.Version $[0-9]$.*/\1/p"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
mTM-align	Algorithm for structural multiple sequence alignments	http://yanglab.nankai.edu.cn/mTM-align/
pigz	Parallel implementation of the gzip algorithm.	https://zlib.net/pigz/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:57:47 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmtmalign%2Falign/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mtmalign/align/blobs/sha256:c47b85adb0c31e1b2deab8c8df52020575839e3545bf50765a43aa812b02dfb3
Size	3.3 KB
Checksum	sha256:c47b85adb0c31e1b2deab8c8df52020575839e3545bf50765a43aa812b02dfb3
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:57:47 (UTC)		1	3.3 KB	-