nf-core/msisensor/scan @ 0.0.0-0c7146d
Summary
Scan a reference genome to get microsatellite & homopolymer information
Get started
Add the following snippet to your workflow script to include this module.
include { MSISENSOR_SCAN } from 'nf-core/msisensor/scan'
License
MIT License
Process
Name
|
MSISENSOR_SCAN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA file *.{fa,fasta}
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tab
file
|
MSIsensor scan output file of homopolymers & minisatellites *.msisensor_scan.txt
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| msisensor | MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline. | https://github.com/ding-lab/msisensor |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:57:39 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmsisensor%2Fscan/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/msisensor/scan/blobs/sha256:f2314f7f940bedeb3c2d3d976eac333446656938681402b8ef0f550ec5c21da7 |
| Size | 2.4 KB |
| Checksum | sha256:f2314f7f940bedeb3c2d3d976eac333446656938681402b8ef0f550ec5c21da7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:57:39 (UTC) | 1 | 2.4 KB | - |