Nextflow Registry | nf-core/motus/profile@0.0.0-0c7146d

nf-core/motus/profile @ 0.0.0-0c7146d

Taxonomic meta-omics profiling using universal marker genes

classify metagenomics fastq taxonomic profiling

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jianhong

Maintainers: @jianhong

Taxonomic meta-omics profiling using universal marker genes

Add the following snippet to your workflow script to include this module.

include { MOTUS_PROFILE } from 'nf-core/motus/profile'

MIT License

Process

`Name`	`MOTUS_PROFILE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	List of input fastq/fasta files of size 1 and 2 for single-end and paired-end data, respectively. Or the intermediate bam file mapped by bwa to the mOTUs database or the output bam file from motus profile. Or the intermediate mgc read counts table. `*.{fastq,fq,fasta,fa,fastq.gz,fq.gz,fasta.gz,fa.gz,.bam,.mgc}`

`db` directory	mOTUs database downloaded by `motus downloadDB`

Output 5 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bam` file	Optional intermediate sorted BAM file from BWA `*.{bam}`

#2 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.log` file	Standard error logging file containing summary statistics `*.log`

#3 mgc tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.mgc` file	Optional intermediate mgc read count table file saved with `-M`. `*.{mgc}`

#4 out tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.out` file	Results with taxonomic classification of each read `*.out`

#5 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
motus	Marker gene-based OTU (mOTU) profiling	https://motu-tool.org/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:57:35 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmotus%2Fprofile/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/motus/profile/blobs/sha256:f6fb17da78eca6982369e01cb270fa1d7e0204e65a14ce03540f8abcd44413b3
Size	3.5 KB
Checksum	sha256:f6fb17da78eca6982369e01cb270fa1d7e0204e65a14ce03540f8abcd44413b3
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:57:35 (UTC)		1	3.5 KB	-