Nextflow Registry | nf-core/mobsuite/recon@0.0.0-0c7146d

nf-core/mobsuite/recon @ 0.0.0-0c7146d

A tool to reconstruct plasmids in bacterial assemblies

bacteria plasmid cluster

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rpetit3

Maintainers: @rpetit3

A tool to reconstruct plasmids in bacterial assemblies

Add the following snippet to your workflow script to include this module.

include { MOBSUITE_RECON } from 'nf-core/mobsuite/recon'

MIT License

Process

`Name`	`MOBSUITE_RECON`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	A bacterial genome assembly in FASTA format `*.{fasta,fa,fna}`

Output 5 channels

#1 plasmids tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`results/plasmid_*.fasta` file	Each plasmid group is written to an individual FASTA `plasmid_*.fasta`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 chromosome tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`results/chromosome.fasta` file	FASTA file of all contigs found to belong to the chromosome `chromosome.fasta`

#4 contig_report tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`results/contig_report.txt` file	Assignment of the contig to chromosome or a particular plasmid grouping `contig_report.txt`

#5 mobtyper_results tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`results/mobtyper_results.txt` file	Aggregate MOB-typer report files for all identified plasmid `mobtyper_results.txt`

Tool	Description	Homepage
mobsuite	Software tools for clustering, reconstruction and typing of plasmids from draft assemblies.	https://github.com/phac-nml/mob-suite

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:50 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmobsuite%2Frecon/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mobsuite/recon/blobs/sha256:1ad0ddace57096ffed0cbf560dc116e15e1e44961459debae23799654eace237
Size	2.7 KB
Checksum	sha256:1ad0ddace57096ffed0cbf560dc116e15e1e44961459debae23799654eace237
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:50 (UTC)		1	2.7 KB	-