nf-core/mmseqs/search @ 0.0.0-0c7146d
Summary
Search and calculate a score for similar sequences in a query and a target database.
Get started
Add the following snippet to your workflow script to include this module.
include { MMSEQS_SEARCH } from 'nf-core/mmseqs/search'
License
MIT License
Process
Name
|
MMSEQS_SEARCH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
db_query
file
|
Query database |
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
db_target
file
|
Target database |
Output
2 channels
#1
db_search
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/
directory
|
an MMseqs2 database with search results |
#2
versions_mmseqs
tuple
${task.process}
string
|
The name of the process |
|---|---|
mmseqs
string
|
The name of the tool |
mmseqs version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mmseqs | MMseqs2: ultra fast and sensitive sequence search and clustering suite | https://github.com/soedinglab/MMseqs2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:56:42 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Fsearch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mmseqs/search/blobs/sha256:9e8d63bc158beba945f5e999e6752d8a84d79e158280817e89433600ed4b1899 |
| Size | 3.0 KB |
| Checksum | sha256:9e8d63bc158beba945f5e999e6752d8a84d79e158280817e89433600ed4b1899 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:56:42 (UTC) | 1 | 3.0 KB | - |