nf-core/mmseqs/linclust @ 0.0.0-0c7146d
Summary
Cluster sequences in linear time using MMSeqs2 linclust.
Get started
Add the following snippet to your workflow script to include this module.
include { MMSEQS_LINCLUST } from 'nf-core/mmseqs/linclust'
License
MIT License
Process
Name
|
MMSEQS_LINCLUST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
db_input
file
|
Input database |
Output
2 channels
#1
db_cluster
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/
directory
|
a clustered MMseqs2 database |
#2
versions_mmseqs
tuple
${task.process}
string
|
The name of the process |
|---|---|
mmseqs
string
|
The name of the tool |
mmseqs version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mmseqs | MMseqs2: ultra fast and sensitive sequence search and clustering suite | https://github.com/soedinglab/MMseqs2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:56:38 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Flinclust/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mmseqs/linclust/blobs/sha256:72c2a8ee22dc312f43a1319f6e578a1eb0b17bec8f9f3cc924cc12c1dc8cb961 |
| Size | 3.0 KB |
| Checksum | sha256:72c2a8ee22dc312f43a1319f6e578a1eb0b17bec8f9f3cc924cc12c1dc8cb961 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:56:38 (UTC) | 1 | 3.0 KB | - |