Nextflow Registry | nf-core/mmseqs/easycluster@0.0.0-0c7146d

nf-core/mmseqs/easycluster @ 0.0.0-0c7146d

Cluster sequences using MMSeqs2 easy cluster.

protein sequence databases clustering searching mmseqs2

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @Joon-Klaps

Maintainers: @Joon-Klaps

Cluster sequences using MMSeqs2 easy cluster.

Add the following snippet to your workflow script to include this module.

include { MMSEQS_EASYCLUSTER } from 'nf-core/mmseqs/easycluster'

MIT License

Process

`Name`	`MMSEQS_EASYCLUSTER`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`sequence` file	Input sequence file in FASTA/FASTQ format for clustering

Output 4 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.tsv` file	an adjacency list file containing the clusters

#2 fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*all_seqs.fasta` file	a fasta-like file per cluster

#3 representatives tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*rep_seq.fasta` file	a fasta file containing the cluster representatives

#4 versions_mmseqs tuple

`${task.process}` string	The name of the process
`mmseqs` string	The name of the tool
`mmseqs version` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
mmseqs	MMseqs2: ultra fast and sensitive sequence search and clustering suite	https://github.com/soedinglab/MMseqs2

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:34 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Feasycluster/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mmseqs/easycluster/blobs/sha256:6993c6d2f7aa84aecbd770e7e95fc903937bd10fa4049e47604f19ec90b9bc5e
Size	2.6 KB
Checksum	sha256:6993c6d2f7aa84aecbd770e7e95fc903937bd10fa4049e47604f19ec90b9bc5e
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:34 (UTC)		1	2.6 KB	-