Nextflow Registry | nf-core/mirtop/counts@0.0.0-0c7146d

nf-core/mirtop/counts @ 0.0.0-0c7146d

mirtop counts generates a file with the minimal information about each sequence and the count data in columns for each samples.

mirna isomir gff

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @atrigila

Maintainers: @atrigila @lpantano

mirtop counts generates a file with the minimal information about each sequence and the count data in columns for each samples.

Add the following snippet to your workflow script to include this module.

include { MIRTOP_COUNTS } from 'nf-core/mirtop/counts'

MIT License

Process

`Name`	`MIRTOP_COUNTS`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`mirtop_gff` file	GFF file `*.{gff}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`hairpin` file	Hairpin file `*.{fa,fasta}`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`gtf` file	GTF file `*.{gtf}`
`species` string	Species name of the GTF file

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`counts/*.tsv` file	TSV file `*.{tsv}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
mirtop	Small RNA-seq annotation	https://github.com/miRTop/mirtop

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:56:05 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmirtop%2Fcounts/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mirtop/counts/blobs/sha256:67513947a77d7fedd9fa6a773a887795b4d2e9edff601137c9306f7a8c447043
Size	2.6 KB
Checksum	sha256:67513947a77d7fedd9fa6a773a887795b4d2e9edff601137c9306f7a8c447043
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:56:05 (UTC)		1	2.6 KB	-