Nextflow Registry | nf-core/minimac4/compressref@0.0.0-0c7146d

nf-core/minimac4/compressref @ 0.0.0-0c7146d

Compression of a reference panel for genotype imputation to .msav format

haplotypes reference compression genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @LouisLeNezet

Maintainers: @LouisLeNezet

Compression of a reference panel for genotype imputation to .msav format

Add the following snippet to your workflow script to include this module.

include { MINIMAC4_COMPRESSREF } from 'nf-core/minimac4/compressref'

MIT License

Process

`Name`	`MINIMAC4_COMPRESSREF`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`ref` file	Variant reference panel file `*.{vcf,vcf.gz,bcf}`
`ref_index` file	Index file for the reference panel `*.{tbi,csi}`

Output 2 channels

#1 msav tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.msav` file	Multy-sample variant compressed file `*.{msav}`

#2 versions_minimac4 tuple

`${task.process}` string	The name of the process
`minimac4` string	The name of the tool
`minimac4 --version \|& sed '1!d ; s/minimac v//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
minimac4	Computationally efficient genotype imputation	https://github.com/statgen/Minimac4

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:55:48 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fminimac4%2Fcompressref/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/minimac4/compressref/blobs/sha256:0fe4b1919ebe91cb8732fa8db56a06a15e6daa3f1b4ecc62507dc665a1e47548
Size	2.3 KB
Checksum	sha256:0fe4b1919ebe91cb8732fa8db56a06a15e6daa3f1b4ecc62507dc665a1e47548
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:55:48 (UTC)		1	2.3 KB	-