nf-core/minia @ 0.0.0-0c7146d
Summary
Minia is a short-read assembler based on a de Bruijn graph
Get started
Add the following snippet to your workflow script to include this module.
include { MINIA } from 'nf-core/minia'
License
MIT License
Process
Name
|
MINIA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
reads
file
|
Input reads in FastQ format *.{fastq.gz, fastq}
|
Output
5 channels
#1
h5
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.h5
file
|
Minia assembly graph in binary h5 format *.h5
|
#2
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*-minia.log
file
|
Minia assembly log file *-minia.log
|
#3
contigs
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.contigs.fa.gz
file
|
The assembled contigs *.contigs.fa.gz
|
#4
unitigs
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.unitigs.fa.gz
file
|
The assembled unitigs *.unitigs.fa.gz
|
#5
versions_minia
tuple
${task.process}
string
|
The name of the process |
|---|---|
minia
string
|
The name of the tool |
minia -v | sed -n 's/Minia version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| minia | Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. | https://github.com/GATB/minia |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:55:44 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fminia/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/minia/blobs/sha256:5edc61c7bda97e853f0d0b6d79967df9fa073ad29677db604a93a2b438b23e8c |
| Size | 2.7 KB |
| Checksum | sha256:5edc61c7bda97e853f0d0b6d79967df9fa073ad29677db604a93a2b438b23e8c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:55:44 (UTC) | 1 | 2.7 KB | - |