Nextflow Registry | nf-core/methbat/profile@0.0.0-0c7146d

nf-core/methbat/profile @ 0.0.0-0c7146d

Runs methbat profile command to create methylation profiles for regions of interest from CpG metrics.

methylation epigenetics pacbio

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @inemesb

Maintainers: @inemesb

Runs methbat profile command to create methylation profiles for regions of interest from CpG metrics.

Add the following snippet to your workflow script to include this module.

include { METHBAT_PROFILE } from 'nf-core/methbat/profile'

MIT License

Process

`Name`	`METHBAT_PROFILE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`files` file	Zipped pb-cpg-tools output files and index files `*.{bed.gz, bed.gz.tbi}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`regions` file	Background profile with regions of interest `*.{tsv,csv}`

Output 3 channels

#1 asm_bed tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`*.bed` file	BED file with individual ASM CpG loci, produced by '--output-asm-bed' flag `*.bed`

#2 region_profile tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`*.tsv` file	Methylation profile for regions of interest `*.tsv`

#3 versions_methbat tuple

`${task.process}` string	The name of the process
`methbat` string	The name of the tool
`methbat --version 2>&1 \| sed 's/.* //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
methbat	A battery of methylation tools for PacBio HiFi reads	https://github.com/PacificBiosciences/MethBat

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:55:31 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmethbat%2Fprofile/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/methbat/profile/blobs/sha256:4bf28ccf18079dd24e49151066c6519d9ce9e3b004a5207bcc557ebb90c048ff
Size	3.5 KB
Checksum	sha256:4bf28ccf18079dd24e49151066c6519d9ce9e3b004a5207bcc557ebb90c048ff
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:55:31 (UTC)		1	3.5 KB	-