Nextflow Registry | nf-core/metamaps/mapdirectly@0.0.0-0c7146d

nf-core/metamaps/mapdirectly @ 0.0.0-0c7146d

Maps long reads to a metamaps database

metamaps long reads metagenomics taxonomy

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @henningonsbring @sofstam

Maintainers: @sofstam

Maps long reads to a metamaps database

Add the following snippet to your workflow script to include this module.

include { METAMAPS_MAPDIRECTLY } from 'nf-core/metamaps/mapdirectly'

MIT License

Process

`Name`	`METAMAPS_MAPDIRECTLY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	Input fastq file containing query sequences `*.{fq,fastq,fastq.gz,fq.gz}`

`database` file	Database file in fasta format `*.{fa,fasta}`

Output 5 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 meta_file tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*classification_res.meta` file	Statistics for mapping result `*.{classification_res.meta}`

#3 para_file tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*classification_res.parameters` file	Log with parameters `*.{classification_res.parameters}`

#4 classification_res tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*classification_res` file	Coordinates where reads map `*.{classification_res}`

#5 meta_unmappedreadsLengths tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*classification_res.meta.unmappedReadsLengths` file	Statistics for length of unmapped reads `*.{classification_res.meta.unmappedReadsLengths}`

Tool	Description	Homepage
metamaps	MetaMaps is a tool for long-read metagenomic analysis	https://github.com/DiltheyLab/MetaMaps

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:55:14 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmetamaps%2Fmapdirectly/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/metamaps/mapdirectly/blobs/sha256:ee1ceb99eb3d3a2192fd035c7578c8a37e6e590e97e4a43690fae289f4e8db80
Size	2.9 KB
Checksum	sha256:ee1ceb99eb3d3a2192fd035c7578c8a37e6e590e97e4a43690fae289f4e8db80
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:55:14 (UTC)		1	2.9 KB	-