Nextflow Registry | nf-core/metabat2/metabat2@0.0.0-0c7146d

nf-core/metabat2/metabat2 @ 0.0.0-0c7146d

Metagenome binning of contigs

sort binning depth bam coverage de novo assembly

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @maxibor @jfy133

Maintainers: @maxibor @jfy133

Metagenome binning of contigs

Add the following snippet to your workflow script to include this module.

include { METABAT2_METABAT2 } from 'nf-core/metabat2/metabat2'

MIT License

Process

`Name`	`METABAT2_METABAT2`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Fasta file of the assembled contigs `*.{fa,fas,fasta,fna,fa.gz,fas.gz,fasta.gz,fna.gz}`
`depth` file	Optional text file listing the coverage per contig pre-generated by metabat2_jgisummarizebamcontigdepths `*.txt`

Output 6 channels

#1 fasta tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*[!lowDepth\|tooShort\|unbinned].fa.gz` file	Bins created from assembled contigs in fasta file `*.fa.gz`

#2 lowdepth tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.lowDepth.fa.gz` file	Contigs that did not have sufficient depth for binning `*.lowDepth.fa.gz`

#3 tooshort tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tooShort.fa.gz` file	Contigs that did not pass length filtering `*.tooShort.fa.gz`

#4 unbinned tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.unbinned.fa.gz` file	Contigs that pass length and depth filtering but could not be binned `*.unbinned.fa.gz`

#5 membership tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv.gz` file	cluster memberships as a matrix format. `*.tsv.gz`

#6 versions_metabat2 tuple

`${task.process}` string	The name of the process
`metabat2` string	The name of the tool
`metabat2 --help 2>&1 \| sed -n "2s/.:$[0-9]\.[0-9]$./\1/p"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
metabat2	Metagenome binning	https://bitbucket.org/berkeleylab/metabat/src/master/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:55:04 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmetabat2%2Fmetabat2/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/metabat2/metabat2/blobs/sha256:f8264ef9ea9b85ae40b299873afafa9758873117d2658ed098794ebcf3399cb0
Size	3.4 KB
Checksum	sha256:f8264ef9ea9b85ae40b299873afafa9758873117d2658ed098794ebcf3399cb0
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	0