Nextflow Registry | nf-core/metabat2/jgisummarizebamcontigdepths@0.0.0-0c7146d

nf-core/metabat2/jgisummarizebamcontigdepths @ 0.0.0-0c7146d

Depth computation per contig step of metabat2

sort binning depth bam coverage de novo assembly

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @maxibor

Maintainers: @maxibor

Depth computation per contig step of metabat2

Add the following snippet to your workflow script to include this module.

include { METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS } from 'nf-core/metabat2/jgisummarizebamcontigdepths'

MIT License

Process

`Name`	`METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bam` file	Sorted BAM file of reads aligned on the assembled contigs `*.bam`
`bai` file	BAM index file `*.bam.bai`

Output 2 channels

#1 depth tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.txt.gz` file	Text file listing the coverage per contig `.txt.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
metabat2	Metagenome binning	https://bitbucket.org/berkeleylab/metabat/src/master/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:55:02 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmetabat2%2Fjgisummarizebamcontigdepths/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/metabat2/jgisummarizebamcontigdepths/blobs/sha256:653f507465a5a278d926b2c192cf86a49495385f9fb91466535f942a2956f897
Size	2.4 KB
Checksum	sha256:653f507465a5a278d926b2c192cf86a49495385f9fb91466535f942a2956f897
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:55:02 (UTC)		1	2.4 KB	-