Nextflow Registry | nf-core/melon@0.0.0-0c7146d

nf-core/melon @ 0.0.0-0c7146d

Performs taxonomic profiling of long metagenomic reads against the melon database

profile metagenomics melon classification long reads nanopore

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @eparisis

Maintainers: @eparisis

Performs taxonomic profiling of long metagenomic reads against the melon database

Add the following snippet to your workflow script to include this module.

include { MELON } from 'nf-core/melon'

MIT License

Process

`Name`	`MELON`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:true ]`.
`reads` file	Quality-controlled long reads. `*.{fa,fasta,fas,fna,fq,fastq}{,.gz}`

`database` directory	Melon database.

`k2_db` directory	Kraken2 database for pre-filtering of non-prokaryotic reads (needs to include at least human and fungi).

Output 4 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:true ]`.
`${prefix}.log` file	Log file containing Melon standard output.

#2 versions

`versions.yml` file	File containing software versions. `versions.yml`

#3 tsv_output tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:true ]`.
`${prefix}/*.tsv` file	Melon output tsv file containing taxonomic profiling results. `*.tsv`

#4 json_output tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:true ]`.
`${prefix}/*.json` file	Melon output json file containing per-read taxonomic classification results. `*.json`

Tool	Description	Homepage
melon	Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes	https://github.com/xinehc/melon

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:54:39 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmelon/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/melon/blobs/sha256:ed4a0226271ab2e771919da43951b2522e1bb8f083abf647251c28c017b6a50a
Size	2.6 KB
Checksum	sha256:ed4a0226271ab2e771919da43951b2522e1bb8f083abf647251c28c017b6a50a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:54:39 (UTC)		1	2.6 KB	-