Nextflow Registry | nf-core/mashmap@0.0.0-0c7146d

nf-core/mashmap @ 0.0.0-0c7146d

Mashmap is an approximate long read or contig mapper based on Jaccard similarity

mapper aligner minhash kmer

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @mberacochea

Maintainers: @mberacochea

Mashmap is an approximate long read or contig mapper based on Jaccard similarity

Add the following snippet to your workflow script to include this module.

include { MASHMAP } from 'nf-core/mashmap'

MIT License

Process

`Name`	`MASHMAP`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fasta` file	Input fasta file containing query sequences `*.{fa,fasta,fa.gz,fasta.gz}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`reference` file	Input fasta file containing reference sequences `*.{fa,fasta,fa.gz,fasta.gz}`

Output 2 channels

#1 paf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.paf` file	Alignment in PAF format `*.paf`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
mashmap	A fast approximate aligner for long DNA sequences.	https://github.com/marbl/MashMap

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:54:08 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmashmap/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mashmap/blobs/sha256:9f9edbcd6eac8fc39c9c95a6a44d01ca9fb232fab392b1147da7198474fda286
Size	2.3 KB
Checksum	sha256:9f9edbcd6eac8fc39c9c95a6a44d01ca9fb232fab392b1147da7198474fda286
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:54:08 (UTC)		1	2.3 KB	-