Nextflow Registry | nf-core/mash/dist@0.0.0-0c7146d

nf-core/mash/dist @ 0.0.0-0c7146d

Calculate Mash distances between reference and query sequences

distance estimate reference query

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rpetit3

Maintainers: @rpetit3

Calculate Mash distances between reference and query sequences

Add the following snippet to your workflow script to include this module.

include { MASH_DIST } from 'nf-core/mash/dist'

MIT License

Process

`Name`	`MASH_DIST`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`query` file	FASTA, FASTQ or Mash sketch `*.{fasta,fasta.gz,fastq,fastq.gz,msh}`

`reference` file	FASTA, FASTQ or Mash sketch `*.{fasta,fasta.gz,fastq,fastq.gz,msh}`

Output 2 channels

#1 dist tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.txt` file	The results from mash dist `*.txt`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
mash	Fast sequence distance estimator that uses MinHash	https://github.com/marbl/Mash

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:54:03 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmash%2Fdist/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mash/dist/blobs/sha256:677e3302ea68431f334733108439f81893f4c902846c513db31aef564cd955c5
Size	2.3 KB
Checksum	sha256:677e3302ea68431f334733108439f81893f4c902846c513db31aef564cd955c5
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:54:03 (UTC)		1	2.3 KB	-