nf-core/malt/run @ 0.0.0-0c7146d
Summary
MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
Get started
Add the following snippet to your workflow script to include this module.
include { MALT_RUN } from 'nf-core/malt/run'
License
MIT License
Process
Name
|
MALT_RUN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastqs
file
|
Input FASTQ files *.{fastq.gz,fq.gz}
|
index
directory
|
Index/database directory from malt-build */
|
|---|
Output
4 channels
#1
log
tuple
meta
file
|
MEGAN6 RMA6 file *.rma6
|
|---|---|
*.log
file
|
Log of verbose MALT stdout *-malt-run.log
|
#2
rma6
tuple
meta
file
|
MEGAN6 RMA6 file *.rma6
|
|---|---|
*.rma6
file
|
MEGAN6 RMA6 file *.rma6
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
alignments
tuple
meta
file
|
MEGAN6 RMA6 file *.rma6
|
|---|---|
*.{tab,text,sam,tab.gz,text.gz,sam.gz}
file
|
Alignment files in Tab, Text or MEGAN-compatible SAM format *.{tab,txt,sam}
|
| Tool | Description | Homepage |
|---|---|---|
| malt | A tool for mapping metagenomic data | https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:53:16 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmalt%2Frun/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/malt/run/blobs/sha256:270a807d3fc9c34b98d40da53f881669d0e01c971943ab1769bf3a977a319f02 |
| Size | 3.1 KB |
| Checksum | sha256:270a807d3fc9c34b98d40da53f881669d0e01c971943ab1769bf3a977a319f02 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:53:16 (UTC) | 1 | 3.1 KB | - |