nf-core/mageck/mle @ 0.0.0-0c7146d
Summary
maximum-likelihood analysis of gene essentialities computation
Get started
Add the following snippet to your workflow script to include this module.
include { MAGECK_MLE } from 'nf-core/mageck/mle'
License
MIT License
Process
Name
|
MAGECK_MLE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
count_table
file
|
Count table file. Each line in the table should include sgRNA name (1st column), target gene (2nd column) and read counts in each sample. *.{txt,tsv}
|
design_matrix
file
|
Design matrix describing the samples and conditions *.{txt,tsv}
|
|---|
Output
3 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
gene_summary
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gene_summary.txt
file
|
Gene summary file describing the fitness score and associated p-values. *.{gene_summary}
|
#3
sgrna_summary
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sgrna_summary.txt
file
|
sgRNA summary file describing the sgRNA and associated gene *.{gene_summary}
|
| Tool | Description | Homepage |
|---|---|---|
| mageck | MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data. | https://sourceforge.net/p/mageck/wiki/Home/#mle |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:53:07 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmageck%2Fmle/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/mageck/mle/blobs/sha256:7267e68ac94b95115025d5688315ea8f8cb191ee507262d46154b48a5d8f0c02 |
| Size | 2.5 KB |
| Checksum | sha256:7267e68ac94b95115025d5688315ea8f8cb191ee507262d46154b48a5d8f0c02 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:53:07 (UTC) | 1 | 2.5 KB | - |