Nextflow Registry | nf-core/macrel/contigs@0.0.0-0c7146d

nf-core/macrel/contigs @ 0.0.0-0c7146d

A tool that mines antimicrobial peptides (AMPs) from (meta)genomes by predicting peptides from genomes (provided as contigs) and outputs all the predicted anti-microbial peptides found.

AMP antimicrobial peptides genome mining metagenomes peptide prediction

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @darcy220606

Maintainers: @darcy220606

Summary

A tool that mines antimicrobial peptides (AMPs) from (meta)genomes by predicting peptides from genomes (provided as contigs) and outputs all the predicted anti-microbial peptides found.

Get started

Add the following snippet to your workflow script to include this module.

include { MACREL_CONTIGS } from 'nf-core/macrel/contigs'

License

MIT License

Process

`Name`	`MACREL_CONTIGS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	A fasta file with nucleotide sequences. `*.{fasta,fa,fna,fasta.gz,fa.gz,fna.gz}`

Output 6 channels

#1 smorfs tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`/.smorfs.faa.gz` file	A zipped fasta file containing aminoacid sequences showing the general gene prediction information in the contigs. `*.smorfs.faa.gz`

#2 all_orfs tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`/.all_orfs.faa.gz` file	A zipped fasta file containing amino acid sequences showing the general gene prediction information in the contigs. `*.all_orfs.faa.gz`

#3 log_file tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`/_log.txt` file	A log file containing the information pertaining to the run. `*_log.txt`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

#5 readme_file tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`/.md` file	A readme file containing tool specific information (e.g. citations, details about the output, etc.). `*.md`

#6 amp_prediction tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`/.prediction.gz` file	A zipped file, with all predicted amps in a table format. `*.prediction.gz`

Tool	Description	Homepage
macrel	A pipeline for AMP (antimicrobial peptide) prediction	https://macrel.readthedocs.io/en/latest/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:52:50 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fmacrel%2Fcontigs/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/macrel/contigs/blobs/sha256:eafd84c7494ba0fb7907d99f81df578fb0f09d5f83bcbf7192a455eaa58bb645
Size	3.0 KB
Checksum	sha256:eafd84c7494ba0fb7907d99f81df578fb0f09d5f83bcbf7192a455eaa58bb645
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:52:50 (UTC)		1	3.0 KB	-