Nextflow Registry | nf-core/ltrfinder@0.0.0-0c7146d

nf-core/ltrfinder @ 0.0.0-0c7146d

Finds full-length LTR retrotranspsons in genome sequences using the parallel version of LTR_Finder

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

Finds full-length LTR retrotranspsons in genome sequences using the parallel version of LTR_Finder

Add the following snippet to your workflow script to include this module.

include { LTRFINDER } from 'nf-core/ltrfinder'

MIT License

Process

`Name`	`LTRFINDER`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Genome sequences in fasta format `*.{fsa,fa,fasta}`

Output 3 channels

#1 gff tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.gff3` file	Annotation in gff3 format `*.gff3`

#2 scn tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.scn` file	Annotation in LTRharvest or LTR_FINDER format `*.scn`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
LTR_FINDER_parallel	A Perl wrapper for LTR_FINDER	https://github.com/oushujun/LTR_FINDER_parallel
LTR_Finder	An efficient program for finding full-length LTR retrotranspsons in genome sequences	https://github.com/xzhub/LTR_Finder

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:52:41 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fltrfinder/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ltrfinder/blobs/sha256:800615e4f5c8f4e2e227f472b7377ac771032225b59d1600a612c39ecd6bc87b
Size	2.6 KB
Checksum	sha256:800615e4f5c8f4e2e227f472b7377ac771032225b59d1600a612c39ecd6bc87b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:52:41 (UTC)		1	2.6 KB	-