Nextflow Registry | nf-core/last/dotplot@0.0.0-0c7146d

nf-core/last/dotplot @ 0.0.0-0c7146d

Makes a dotplot (Oxford Grid) of pair-wise sequence alignments

LAST plot pair alignment MAF

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @charles-plessy

Maintainers: @charles-plessy

Makes a dotplot (Oxford Grid) of pair-wise sequence alignments

Add the following snippet to your workflow script to include this module.

include { LAST_DOTPLOT } from 'nf-core/last/dotplot'

MIT License

Process

`Name`	`LAST_DOTPLOT`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`maf` file	Multiple Alignment Format (MAF) file, compressed with gzip `*.{maf.gz}`
`annot_b` file	Annotation file in BED, Repeamasker, genePred or AGP format for the second (vertical) sequence `*.{bed,bed.gz,out,out.gz,rmsk.txt,rmsk.txt.gz,genePred,genePred.gz,gff,gff.gz,gtf,gtf.gz,gap.txt,gap.txt.gz}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample2', single_end:false ]`
`annot_a` file	Annotation file in BED, Repeamasker, genePred or AGP format for the first (horizontal) sequence `*.{bed,bed.gz,out,out.gz,rmsk.txt,rmsk.txt.gz,genePred,genePred.gz,gff,gff.gz,gtf,gtf.gz,gap.txt,gap.txt.gz}`

`format` string	Output format (PNG or GIF).

`filter` boolean	Remove isolated alignments using the `maf-linked` software.

Output 2 channels

#1 plot tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.{gif,png}` file	Pairwise alignment dot plot image, in GIF or PNG format. `*.{gif,png}`

#2 versions_last tuple

`${task.process}` string	The name of the process
`last` string	The name of the tool
`lastal --version \| sed 's/lastal //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
last	LAST finds & aligns related regions of sequences.	https://gitlab.com/mcfrith/last

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:51:44 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Flast%2Fdotplot/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/last/dotplot/blobs/sha256:5fa8d35f2172d09b2629ddd958cd3bbb1c100562b53764ac47be67fa96b7437d
Size	3.1 KB
Checksum	sha256:5fa8d35f2172d09b2629ddd958cd3bbb1c100562b53764ac47be67fa96b7437d
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:51:44 (UTC)		1	3.1 KB	-