Nextflow Registry | nf-core/krona/ktimporttext@0.0.0-0c7146d

nf-core/krona/ktimporttext @ 0.0.0-0c7146d

Creates a Krona chart from text files listing quantities and lineages.

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jianhong

Maintainers: @jianhong

Creates a Krona chart from text files listing quantities and lineages.

Add the following snippet to your workflow script to include this module.

include { KRONA_KTIMPORTTEXT } from 'nf-core/krona/ktimporttext'

MIT License

Process

`Name`	`KRONA_KTIMPORTTEXT`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`report` file	Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with '#' will be ignored. `*.{txt}`

Output 2 channels

#1 html tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.html` file	A html file containing an interactive krona plot. `*.{html}`

#2 versions_krona tuple

`${task.process}` string	The name of the process
`krona` string	The name of the tool
`ktImportText \| grep -Po '(?<=KronaTools )[0-9.]+'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
krona	Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.	https://github.com/marbl/Krona/wiki/KronaTools

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:51:40 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkrona%2Fktimporttext/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/krona/ktimporttext/blobs/sha256:4ccb9eefc15632c6683840ab4e01dd51e035be0d2c851c74846a86d5bac64de3
Size	2.5 KB
Checksum	sha256:4ccb9eefc15632c6683840ab4e01dd51e035be0d2c851c74846a86d5bac64de3
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:51:40 (UTC)		1	2.5 KB	-