Nextflow Registry | nf-core/krona/ktimporttaxonomy@0.0.0-0c7146d

nf-core/krona/ktimporttaxonomy @ 0.0.0-0c7146d

KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot.

plot taxonomy interactive html visualisation krona chart

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @mjakobs

Maintainers: @mjakobs

KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot.

Add the following snippet to your workflow script to include this module.

include { KRONA_KTIMPORTTAXONOMY } from 'nf-core/krona/ktimporttaxonomy'

MIT License

Process

`Name`	`KRONA_KTIMPORTTAXONOMY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`report` file	A tab-delimited file with taxonomy IDs and (optionally) query IDs, magnitudes, and scores. Query IDs are taken from column 1, taxonomy IDs from column 2, and scores from column 3. Lines beginning with # will be ignored. `*.{tsv}`

`taxonomy` file	Path to a Krona taxonomy .tab file normally downloaded and generated by krona/ktUpdateTaxonomy. Custom taxonomy files can have any name, but must end in `.tab`. `*tab`

Output 2 channels

#1 html tuple

`meta` file	A html file containing an interactive krona plot. `*.{html}`
`*.html` file	A html file containing an interactive krona plot. `*.{html}`

#2 versions_krona tuple

`${task.process}` string	The name of the process
`krona` string	The name of the tool
`ktImportTaxonomy \| grep -Po '(?<=KronaTools )[0-9.]+'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
krona	Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.	https://github.com/marbl/Krona/wiki/KronaTools

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:51:38 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkrona%2Fktimporttaxonomy/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/krona/ktimporttaxonomy/blobs/sha256:fb8a86433d2da97aa885eb8714e38e802165ea7b5ed775c7f5bcd14a15761169
Size	2.6 KB
Checksum	sha256:fb8a86433d2da97aa885eb8714e38e802165ea7b5ed775c7f5bcd14a15761169
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:51:38 (UTC)		1	2.6 KB	-