nf-core/krakenuniq/build @ 0.0.0-0c7146d
Summary
Download and build (custom) KrakenUniq databases
Get started
Add the following snippet to your workflow script to include this module.
include { KRAKENUNIQ_BUILD } from 'nf-core/krakenuniq/build'
License
MIT License
Process
Name
|
KRAKENUNIQ_BUILD |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
custom_library_dir
directory
|
Optional directory containing custom fasta files for database build *
|
custom_taxonomy_dir
directory
|
Optional directory containing custom taxonomy files for database build *
|
custom_seqid2taxid
file
|
custom seqid2taxid |
keep_intermediate
boolean
|
Keep intermediate files that are not used by the database itself true|false
|
|---|
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/
directory
|
Directory containing KrakenUniq database */
|
#2
versions_krakenuniq
tuple
${task.process}
string
|
The name of the process |
|---|---|
krakenuniq
string
|
The name of the tool |
krakenuniq --version | sed '1!d;s/KrakenUniq version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| krakenuniq | Metagenomics classifier with unique k-mer counting for more specific results | https://github.com/fbreitwieser/krakenuniq |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 70ea099f53b6bcff84c77e7d7a211ebc6ca8be32 |
| Release Date | 08 Apr 2026 18:51:29 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkrakenuniq%2Fbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/krakenuniq/build/blobs/sha256:672de8b47c506362e6df260c827afed8dd0f7472c9181cbc3e5d5287ddc04faf |
| Size | 3.4 KB |
| Checksum | sha256:672de8b47c506362e6df260c827afed8dd0f7472c9181cbc3e5d5287ddc04faf |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-70ea099 | 26 Apr 2026 19:30:24 (UTC) | 1 | 3.7 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:29 (UTC) | 1 | 3.4 KB | - |