nf-core/kmcp/profile @ 0.0.0-0c7146d
Summary
Generate taxonomic profile from search results
Get started
Add the following snippet to your workflow script to include this module.
include { KMCP_PROFILE } from 'nf-core/kmcp/profile'
License
MIT License
Process
Name
|
KMCP_PROFILE |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
search_results
file
|
Gzipped file output from kmcp search module *.gz
|
db
directory
|
Database directory containing taxdump files and taxid file |
|---|
level
string
|
Taxonomic rank to generate profile at (e.g. "species", "strain", "assembly") |
|---|
Output
2 channels
#1
profile
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.profile
file
|
Tab-delimited format file with 17 columns. *.profile
|
#2
versions_kmcp
tuple
${task.process}
string
|
The name of the process |
|---|---|
kmcp
string
|
The name of the tool |
kmcp version 2>&1 | sed 's/^.*kmcp v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kmcp | Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping | https://github.com/shenwei356/kmcp |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:51:08 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkmcp%2Fprofile/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kmcp/profile/blobs/sha256:d4f4cb237b84ca74f159f02dcb04fba37a82d7153f4707d6f3b7a98175d9c3ff |
| Size | 2.7 KB |
| Checksum | sha256:d4f4cb237b84ca74f159f02dcb04fba37a82d7153f4707d6f3b7a98175d9c3ff |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:51:08 (UTC) | 1 | 2.7 KB | - |