Nextflow Registry | nf-core/khmer/uniquekmers@0.0.0-0c7146d

nf-core/khmer/uniquekmers @ 0.0.0-0c7146d

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

khmer k-mer effective genome size

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @JoseEspinosa

Maintainers: @JoseEspinosa

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Add the following snippet to your workflow script to include this module.

include { KHMER_UNIQUEKMERS } from 'nf-core/khmer/uniquekmers'

MIT License

Process

`Name`	`KHMER_UNIQUEKMERS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	fasta file `*.{fa,fasta}`

`kmer_size` integer	k-mer size to use

Output 3 channels

#1 kmers tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.kmers.txt` file	Text file containing number of kmers `*.kmers.txt`

#2 report tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.report.txt` file	Text file containing unique-kmers.py execution report `*.report.txt`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
khmer	khmer k-mer counting library	https://github.com/dib-lab/khmer

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:50:56 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkhmer%2Funiquekmers/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/khmer/uniquekmers/blobs/sha256:061d5b885965d5489da695a770b208438ad3a2ed06535d277c2eca0d636f53d4
Size	2.4 KB
Checksum	sha256:061d5b885965d5489da695a770b208438ad3a2ed06535d277c2eca0d636f53d4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:50:56 (UTC)		1	2.4 KB	-