Nextflow Registry | nf-core/khmer/trimlowabund@0.0.0-0c7146d

nf-core/khmer/trimlowabund @ 0.0.0-0c7146d

Removes low abundance k-mers from FASTA/FASTQ files

quality control genomics filtering reads khmer k-mer

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @zachary-foster

Maintainers: @zachary-foster

Removes low abundance k-mers from FASTA/FASTQ files

Add the following snippet to your workflow script to include this module.

include { KHMER_TRIMLOWABUND } from 'nf-core/khmer/trimlowabund'

MIT License

Process

`Name`	`KHMER_TRIMLOWABUND`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`seq_file` file	fasta/fastq file `*.{fa,fasta,fas,fq,fastq}`

Output 2 channels

#1 trimmed tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${output_path}` file	fasta/fastq file with low abundance k-mers removed. `*.{fa,fasta,fas,fq,fastq}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
khmer	khmer k-mer counting library	https://github.com/dib-lab/khmer

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:50:54 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkhmer%2Ftrimlowabund/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/khmer/trimlowabund/blobs/sha256:111dfdc45a2ff853fb930779a18d3b4b51a428b48333dc6e0f49a672ac65147b
Size	2.6 KB
Checksum	sha256:111dfdc45a2ff853fb930779a18d3b4b51a428b48333dc6e0f49a672ac65147b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:50:54 (UTC)		1	2.6 KB	-