nf-core/khmer/normalizebymedian @ 0.0.0-0c7146d
Summary
Module that calls normalize-by-median.py from khmer. The module can take a mix of paired end (interleaved) and single end reads. If both types are provided, only a single file with single ends is possible.
Get started
Add the following snippet to your workflow script to include this module.
include { KHMER_NORMALIZEBYMEDIAN } from 'nf-core/khmer/normalizebymedian'
License
MIT License
Process
Name
|
KHMER_NORMALIZEBYMEDIAN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastq_paired
file
|
Paired-end interleaved fastq files *.{fq,fastq}.gz
|
fastq_unpaired
file
|
Single-end fastq files *.{fq,fastq}.gz
|
Output
2 channels
#1
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Interleaved fastq files *.{fq,fastq}.gz
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| khmer | khmer k-mer counting library | https://github.com/dib-lab/khmer |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:50:52 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkhmer%2Fnormalizebymedian/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/khmer/normalizebymedian/blobs/sha256:750f2e7f46371c5d6d62ad1ec827a9913260527ae3452abb00810c7a2eea6b79 |
| Size | 3.0 KB |
| Checksum | sha256:750f2e7f46371c5d6d62ad1ec827a9913260527ae3452abb00810c7a2eea6b79 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:52 (UTC) | 1 | 3.0 KB | - |