Nextflow Registry | nf-core/kat/hist@0.0.0-0c7146d

nf-core/kat/hist @ 0.0.0-0c7146d

Creates a histogram of the number of distinct k-mers having a given frequency.

k-mer histogram count

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @mahesh-panchal

Maintainers: @mahesh-panchal

Creates a histogram of the number of distinct k-mers having a given frequency.

Add the following snippet to your workflow script to include this module.

include { KAT_HIST } from 'nf-core/kat/hist'

MIT License

Process

`Name`	`KAT_HIST`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.

Output 7 channels

#1 ps tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.ps` file	KAT plot of k-mer histogram in PS format `*.ps`

#2 pdf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.pdf` file	KAT plot of k-mer histogram in PDF format `*.pdf`

#3 png tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.png` file	KAT plot of k-mer histogram in PNG format `*.png`

#4 hist tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.hist` file	KAT histogram of k-mer counts `*.hist`

#5 json tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.hist.dist_analysis.json` file	KAT histogram summary of distance analysis `*.hist.dist_analysis.json`

#6 versions

`versions.yml` file	File containing software versions `versions.yml`

#7 jellyfish_hash tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`-hash.jf` file	Jellyfish hash file `-hist.jf`

Tool	Description	Homepage
kat	KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts	https://www.earlham.ac.uk/kat-tools

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:50:50 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkat%2Fhist/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kat/hist/blobs/sha256:fd6b74ccd7b62a8d4562dbd35ed7e1c89f72a46109fbd970e8d34e7ff7357781
Size	2.5 KB
Checksum	sha256:fd6b74ccd7b62a8d4562dbd35ed7e1c89f72a46109fbd970e8d34e7ff7357781
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:50:50 (UTC)		1	2.5 KB	-